Augmented-Nature-UniProt-MCP-Server and PDB-MCP-Server
These two MCP servers are complementary, as one provides access to the UniProt database for protein sequence and functional information, while the other provides access to the PDB for 3D structural data of biomolecules, both of which are essential for comprehensive molecular biology research.
About Augmented-Nature-UniProt-MCP-Server
Augmented-Nature/Augmented-Nature-UniProt-MCP-Server
A comprehensive Model Context Protocol (MCP) server providing advanced access to the UniProt protein database.
About PDB-MCP-Server
Augmented-Nature/PDB-MCP-Server
A Model Context Protocol (MCP) server that provides access to the Protein Data Bank (PDB) - the worldwide repository of information about the 3D structures of proteins, nucleic acids, and complex assemblies.
Exposes PDB search, structure retrieval, and quality validation through five core tools and URI-based resources, enabling direct access to multiple coordinate formats (PDB, mmCIF, mmTF, XML) and validation metrics like resolution, R-factors, and clash scores. Integrates with RCSB PDB's REST, Search, and File Download APIs via stdio transport for seamless integration with Claude Desktop and complementary servers like UniProt and AlphaFold MCP. Implements comprehensive error handling for API rate limiting, invalid identifiers, and network failures.
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