Uniprot-MCP and protein-mcp-server

Uniprot-MCP
51
Established
protein-mcp-server
32
Emerging
Maintenance 10/25
Adoption 7/25
Maturity 20/25
Community 14/25
Maintenance 6/25
Adoption 6/25
Maturity 20/25
Community 0/25
Stars: 2
Forks: 3
Downloads: 126
Commits (30d): 0
Language: Python
License: MIT
Stars: 1
Forks: —
Downloads: 123
Commits (30d): 0
Language: TypeScript
License: Apache-2.0
No risk flags
No risk flags

About Uniprot-MCP

josefdc/Uniprot-MCP

UniProt MCP Server - Access comprehensive protein data via Model Context Protocol. Search, retrieve, and analyze UniProt entries with full-text search, ID mapping, and rich metadata. Supports stdio & HTTP transports for Claude Desktop and custom integrations.

Implements production-grade resilience patterns including exponential backoff retries, concurrent request pooling (configurable to 8 workers), and progress tracking for long-running ID mapping jobs across 200+ database types. Built on FastMCP for stdio and Starlette for HTTP, with Prometheus metrics and structured Pydantic models ensuring type safety for LLM agent integration. Includes VCR-based integration tests, field subsetting to optimize payload sizes, and CORS/health check endpoints for seamless Claude Desktop and custom client deployments.

About protein-mcp-server

cyanheads/protein-mcp-server

MCP Server for 3D protein structural data retrieval & analysis from RCSB PDB, PDBe, and UniProt.

Related comparisons

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