Medical Image Segmentation Computer Vision Tools

There are 22 medical image segmentation tools tracked. 1 score above 50 (established tier). The highest-rated is aelefebv/nellie at 57/100 with 90 stars and 233 monthly downloads.

Get all 22 projects as JSON

curl "https://pt-edge.onrender.com/api/v1/datasets/quality?domain=computer-vision&subcategory=medical-image-segmentation&limit=20"

Open to everyone — 100 requests/day, no key needed. Get a free key for 1,000/day.

#	Tool	Score	Tier	Stars	Language
1	aelefebv/nellie Nellie: Automated organelle segmentation, tracking, and hierarchical...	57	Established	90	Python
2	GewelsJI/VPS Official website for "Video Polyp Segmentation: A Deep Learning Perspective...	48	Emerging	214	Python
3	MIC-DKFZ/medicaldetectiontoolkit The Medical Detection Toolkit contains 2D + 3D implementations of prevalent...	44	Emerging	1,349	Python
4	mahmoodlab/HIPT Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)	42	Emerging	615	Jupyter Notebook
5	SerdarHelli/Segmentation-of-Teeth-in-Panoramic-X-ray-Image-Using-U-Net The aim of this study is automatic semantic segmentation in one-shot...	40	Emerging	163	Jupyter Notebook
6	gaudot/SlicerDentalSegmentator 3D Slicer extension for fully-automatic segmentation of CT and CBCT dental volumes.	39	Emerging	148	Python
7	ternaus/angiodysplasia-segmentation Wining solution and its further development for MICCAI 2017 Endoscopic...	38	Emerging	80	Jupyter Notebook
8	PaddleCV-SIG/MedicalSeg MedicalSeg is an easy-to-use 3D medical image segmentation toolkit that...	35	Emerging	81	Python
9	iBrain-Lab/MedNet-PVS Fully automated 3D perivascular space (PVS) segmentation tool for T1w and...	35	Emerging	12	Python
10	yilmaz0734/BrainCTImageStrokeDetection-Segmentation This project firstly aims to classify brain CT images using convolutional...	32	Emerging	26	Jupyter Notebook
11	DebeshJha/ColonSegNet Official implementation of ColonSegNet: Real-Time Polyp Segmentation (Used...	27	Experimental	54	Python
12	Limingxing00/Retinal-Vessel-Segmentation-ISBI2022 Accepted by ISBI 2022	25	Experimental	42	Python
13	kirkegaardlab/deeptangle [Comms Bio 2023] Official Code for Fast Detection of Slender Bodies in High...	22	Experimental	40	Python
14	YangTuanAnh/UNet-HoVerGNN UNet-HoVerGNN: Structured Graph Integration into HoVerNet for Enhanced...	22	Experimental	17	Jupyter Notebook
15	TimKong21/Polyp-Segmentation Polyp segmentation tool utilizing U-Net for accurate medical image analysis,...	22	Experimental	11	Jupyter Notebook
16	bupt-ai-cz/CAC-UNet-DigestPath2019 1st to MICCAI DigestPath2019 challenge...	21	Experimental	100	Python
17	KibromBerihu/MIPsegmentatorV1 A 3D lesion segmentation method on whole-body PET images including automated...	20	Experimental	12	—
18	IPMI-ICNS-UKE/4d-cbct-mc Monte Carlo simulation of (4D) cone beam computed tomography	18	Experimental	11	C
19	Maxlo24/ALI_CBCT Automatic landmark identification in CBCT scans	18	Experimental	37	Python
20	DebeshJha/Kvasir-SEG Kvasir-SEG: A Segmented Polyp Dataset	16	Experimental	16	—
21	yu4u/kaggle-czii-4th This is the implementation of the 4th place solution (yu4u's part) for CZII...	15	Experimental	16	Python
22	phkhanhtrinh23/vessel_segmentation MultiResDenseUNet (SVOISP-2021-KH&KTMT-125) - Winner (3rd Prize) of The 10th...	12	Experimental	16	Jupyter Notebook