Biomedical Literature RAG Embedding Tools

RAG systems specifically designed for searching, retrieving, and synthesizing biomedical literature, clinical research, and pharmaceutical documents. Does NOT include general-purpose RAG systems, non-medical research tools, or healthcare compliance/billing applications.

There are 39 biomedical literature rag tools tracked. The highest-rated is holisticon/multimodal-rag-demo at 33/100 with 6 stars.

Get all 39 projects as JSON

curl "https://pt-edge.onrender.com/api/v1/datasets/quality?domain=embeddings&subcategory=biomedical-literature-rag&limit=20"

Open to everyone — 100 requests/day, no key needed. Get a free key for 1,000/day.

#	Tool	Score	Tier	Stars	Language
1	holisticon/multimodal-rag-demo 🧠🖼️📄 Multimodal RAG Demo based on Qwen3-VL Embedding and Reranker models	33	Emerging	6	Python
2	debanjan06/geospatial-rag AI Framework for Remote Sensing Image Analysis using RAG - 88%+ accuracy,...	31	Emerging	12	Python
3	berntpopp/phentrieve AI-powered system for mapping clinical text to Human Phenotype Ontology...	25	Experimental	4	Python
4	hadil1999-creator/RAG_Hack_team Our AI Financial Advisor is designed to revolutionize how users interact...	25	Experimental	5	Python
5	sasi123-stack/BioScholar-AI BioScholar AI—an intelligent biomedical research engine powered by OpenClaw...	23	Experimental	1	HTML
6	Atharv279/RAGify-Finance Benchmarks Cohere vs HuggingFace embeddings for financial document Q&A using RAG	23	Experimental	1	Python
7	UKiyooooo/multimodal-rag-engine 🔍 Build an advanced RAG system for multi-modal search across text, images,...	22	Experimental	—	—
8	merlow1337/Priqualis 🔍 Validate healthcare billing packages for NFZ efficiently, reducing...	22	Experimental	—	Python
9	IanD25/principia-diagnostics Graph coherence engine for research datasets — Fisher Information...	22	Experimental	—	Python
10	WINEEL/smartdocs-architect Cloud-hosted GenAI RAG application for semantic document search and grounded...	22	Experimental	—	Python
11	DNSdecoded/IndicRAG Production-ready multilingual RAG system for scientific PDFs. Supports 10+...	21	Experimental	2	Python
12	aimagelab/ReT [CVPR 2025] Recurrence-Enhanced Vision-and-Language Transformers for Robust...	21	Experimental	34	Python
13	SirSail/Priqualis Pre-submission compliance validator for healthcare claims. Combines...	20	Experimental	1	Python
14	FrancescoRomeo02/multimodalragApp Advanced multimodal RAG system for querying PDF documents with text, images,...	20	Experimental	5	Python
15	shakilahmedemon/rag-research-assistant The Advanced RAG Academic Assistant is a sophisticated Retrieval-Augmented...	19	Experimental	—	Python
16	vanbelkummax/polymath A Polymathic Research Intelligence System - Cross-domain literature search...	19	Experimental	—	Python
17	harishkulkarni10/ai-research-assistant-rag Production-ready RAG system for querying ArXiv papers with multi-LLM...	19	Experimental	—	Jupyter Notebook
18	farrimoh/scholar-rag Search, summarize, and cite from your research papers using Azure AI Search...	15	Experimental	—	Python
19	abiruth29/health-materials-rag-system Advanced Biomedical Materials Discovery Platform using RAG and AI	15	Experimental	—	HTML
20	aiagentwithdhruv/multimodal-rag Production-grade Multimodal RAG System — ingest text, PDFs, images, audio,...	15	Experimental	1	Python
21	datafromlopes/edurag_geo Educational & Geospatial Retrieval-Augmented Generation System. A hybrid RAG...	15	Experimental	—	—
22	azhwinraj/multimodal-rag-engine Production-ready RAG system with multi-modal search across text, images,...	15	Experimental	—	—
23	jvachier/scientific-literature-rag Production RAG system for scientific literature synthesis with SPECTER2...	15	Experimental	—	Python
24	CodeWithCharan/PharmaQuery Pharmaceutical Insight Retrieval System designed to help users gain...	14	Experimental	9	Jupyter Notebook
25	ywatanabe1989/openalex-local Local OpenAlex database with 284M+ scholarly works, abstracts, and semantic...	14	Experimental	—	Python
26	anselmoAJ/Multimodal-Clinical-RAG-Assistant-Medical-Text-Image-Retrieval-System- 🩺 Enhance medical diagnostics by integrating text and image analysis,...	14	Experimental	—	Python
27	chaitanyahegde23/slack-finance-copilot Slack-based AI copilot for analyzing personal bank statements using...	14	Experimental	—	—
28	parthtiwari2407/rfx-accelerator End-to-end RFX response automation system leveraging Document AI for OCR,...	14	Experimental	—	Python
29	datalordstephen/finquery FinQuery is an intelligent financial document assistant that helps extract...	12	Experimental	1	Python
30	smebad/PregniSense AI-powered pregnancy risk assessment app that classifies pregnancy symptom...	12	Experimental	1	Python
31	intelligolabs/Le-RNR-Map [ICCV 23] Official repository for Language-enhanced RNR-Map: Querying...	12	Experimental	17	Python
32	DistilledCode/mmrl Multi-Modal Representational Learning for Social Media Popularity Prediction	11	Experimental	2	Python
33	sasi123-stack/kash_proj-master BioSense AI - An intelligent, evidence-based research engine for biomedical...	11	Experimental	—	—
34	DaviAlves06/pharma-rag-assistant Python-based RAG system using Gemini 1.5 Flash to answer pharmaceutical...	11	Experimental	—	Jupyter Notebook
35	bilalnaqvi7/Helpmate-AI-Insurance-RAG-Assistant Built HelpMate AI, a multi-document RAG assistant for insurance policy...	11	Experimental	—	Jupyter Notebook
36	Accrame/financial-rag-assistant RAG system for querying financial documents (10-K filings, earnings reports)	11	Experimental	—	Python
37	galassoandrea/rag-assistant A financial RAG system based on 10-K filings.	11	Experimental	—	Python
38	Mervecaliskann/Video-RAG-AI-Search AI-powered Video Search Engine using Multimodal RAG. Search inside videos...	11	Experimental	—	Python
39	SERGI0HERREROS/OncoCBR OncoCBR is a clinical decision-support system based on Case-Based Reasoning...	11	Experimental	—	Jupyter Notebook