DeepChainBio/bio-transformers
bio-transformers is a wrapper on top of the ESM/Protbert model, trained on millions on proteins and used to predict embeddings.
Supports multiple pooling strategies (CLS token, mean) and pseudo-loglikelihood scoring for amino acid probability prediction across ESM and ProtBERT backends. Provides distributed inference via Ray for multi-GPU acceleration and includes a unified Python API for easy model switching without backend-specific code.
155 stars. No commits in the last 6 months.
Stars
155
Forks
32
Language
Python
License
Apache-2.0
Category
Last pushed
Oct 11, 2023
Commits (30d)
0
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