scanpy and scXpand
scXpand is a specialized analysis tool that depends on scanpy's foundational single-cell processing pipeline to detect T-cell clonal expansion from the RNA-seq data that scanpy has preprocessed and normalized.
About scanpy
scverse/scanpy
Single-cell analysis in Python. Scales to >100M cells.
Provides integrated preprocessing, clustering, trajectory inference, and differential expression testing via the AnnData data structure for efficient in-memory analysis. Leverages optional Dask integration for out-of-core computation on datasets exceeding available RAM. Part of the broader scverse ecosystem, enabling interoperability with complementary single-cell analysis tools.
About scXpand
yizhak-lab-ccg/scXpand
scXpand: detection of T-cell clonal expansion from single-cell RNA sequencing
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