vanvalenlab/deepcell-tf

Built on TensorFlow 2, it provides pre-trained models for cell segmentation (2D/3D) and 2D time-lapse tracking, alongside a datasets module with ~75,000 annotated whole-cell and nuclear imaging samples. The library integrates with the broader DeepCell ecosystem—including the Toolbox for pre/post-processing, Tracking for lineage analysis, and Kiosk for cloud-based batch processing—enabling end-to-end workflows from annotation through deployment.

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