Medical Entity Extraction NLP Tools

Tools for identifying and extracting medical entities (diseases, treatments, drugs, symptoms, adverse events) from clinical and healthcare text using NER techniques. Does NOT include entity linking/disambiguation, general domain NER, or clinical NLP tasks beyond entity extraction.

There are 24 medical entity extraction tools tracked. The highest-rated is AstraZeneca/KAZU at 48/100 with 89 stars and 5,299 monthly downloads.

Get all 24 projects as JSON

curl "https://pt-edge.onrender.com/api/v1/datasets/quality?domain=nlp&subcategory=medical-entity-extraction&limit=20"

Open to everyone — 100 requests/day, no key needed. Get a free key for 1,000/day.

#	Tool	Score	Tier	Stars	Language
1	AstraZeneca/KAZU Fast, world class biomedical NER	48	Emerging	89	Python
2	yuzhimanhua/Multi-BioNER Cross-type Biomedical Named Entity Recognition with Deep Multi-task Learning...	39	Emerging	135	Python
3	mukhal/xlm-roberta-ner Named Entity Recognition with Pretrained XLM-RoBERTa	38	Emerging	92	Python
4	SapphireFang1998/ANCHOLIK-NER-A-Benchmark-Dataset-for-Bangla-Regional-Named-Entity-Recognition Our paper, titled 'ANCHOLIK-NER: A Benchmark Dataset for Bangla Regional...	36	Emerging	1	Jupyter Notebook
5	cdliai/ottoman-ner Ottoman Language Name Entity Recognition toolkit	35	Emerging	5	Python
6	Alibaba-NLP/KB-NER Winner system (DAMO-NLP) of SemEval 2022 MultiCoNER shared task over 10 out...	34	Emerging	186	Python
7	smart-primate/Named_Entity_Recognition_Healthcare_Data Named Entity Recognition in Healthcare data to identify possible diseases...	33	Emerging	12	Jupyter Notebook
8	frankkramer-lab/GERNERMED GERNERMED is the first open neural NER model for medical entities designed...	31	Emerging	18	Python
9	R-aryan/Name_Entity_Recognition This repository contains model for NER trained on clinical data to extract...	24	Experimental	3	Jupyter Notebook
10	blawok/named-entity-recognition 2020 - [RoBERTa, BiLSTM, SageMaker] Experiments with NER	24	Experimental	4	Jupyter Notebook
11	alvi-khan/Bangla-HealthNER The data and code of 'NERvous About My Health: Constructing a Bengali...	24	Experimental	3	Python
12	SuperBruceJia/MedicalNER An implementation of several models (BiLSTM-CRF, BiLSTM-CNN, BiLSTM-BiLSTM)...	23	Experimental	19	Jupyter Notebook
13	mtkaya/medner-tr Turkish Medical Named Entity Recognition System	23	Experimental	1	—
14	frankkramer-lab/GERNERMED-pp GERNERMED++ is a transfer-learning-based open neural NER model for medical...	20	Experimental	9	Python
15	iajaykarthick/NER-medical-text This project is to develop a named entity recognition (NER) model to...	20	Experimental	13	HTML
16	Public-Health-Scotland/dose_instruction_parser Parsing prescription dose instructions using Named Entity Recognition and rules	18	Experimental	4	Python
17	Dimas263/NLP_NER_BILSTM_CRF_Named_Entity_Recognition NLP Named Entity Recognition dalam bidang Biomedis, mendeteksi teks dan...	17	Experimental	2	Jupyter Notebook
18	HasibAlMuzdadid/Bengali-Person-Name-Entity-Extraction Built an intelligent Bengali person name entity extraction engine that reads...	16	Experimental	1	Jupyter Notebook
19	Megha-Bose/Disease-NER Given a medical diagnosis, identifying medical conditions within the text...	14	Experimental	9	Jupyter Notebook
20	maxime7770/NER-Medical-Documents Named-entity recognition (drugs, diseases, ...) in medical documents....	14	Experimental	9	Python
21	Priberam/sru-ner Source code for the paper "Effective Multi-Task Learning for Biomedical...	14	Experimental	3	Python
22	Rajspeaks/Machine-Learning-approach-to-Bengali-corpus-Name-Entity-Recognition-testing-using-BNLP Machine Learning approach to Bengali corpus NER- Named Entity Recognition...	12	Experimental	3	Jupyter Notebook
23	Indrayana-creator/NLP-LEGAL-EXTRACTION Legal entity extraction from Indonesian court verdicts using NLP and deep...	11	Experimental	—	Jupyter Notebook
24	lsvannur/MedicalNER Medical named Entity Recognition for Building Knowledge Graphs	10	Experimental	1	Jupyter Notebook

Comparisons in this category

GERNERMED and GERNERMED-pp (31 vs 20)