man4ish/bacformer-comparative-functional-pipeline

Pipeline to extract bacterial protein sequences, generate Bacformer embeddings, compute genome-level cosine similarity, cluster related strains, and interpret results using pangenome analysis, pathway enrichment, and RAG-based functional annotation.

13
/ 100
Experimental
No License No Package No Dependents
Maintenance 6 / 25
Adoption 2 / 25
Maturity 5 / 25
Community 0 / 25

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Language

Python

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Category

rag-starter-projects

Last pushed

Nov 17, 2025

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RAG Starter Projects · 126 tools

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