Uncategorized Scientific ML Tools

There are 123 uncategorized libraries tracked. 20 score above 70 (verified tier). The highest-rated is jobovy/galpy at 81/100 with 268 stars and 5,989 monthly downloads. 8 of the top 10 are actively maintained.

Get all 123 projects as JSON

curl "https://pt-edge.onrender.com/api/v1/datasets/quality?domain=scientific-ml&subcategory=uncategorized&limit=20"

Open to everyone — 100 requests/day, no key needed. Get a free key for 1,000/day.

#	Library	Score	Tier	Stars	Language
1	jobovy/galpy Galactic Dynamics in python	81	Verified	268	Python
2	AMReX-Codes/amrex AMReX: Software Framework for Block Structured AMR	76	Verified	733	C++
3	stdlib-js/stdlib ✨ The fundamental numerical library for JavaScript and TypeScript. ✨	76	Verified	5,795	JavaScript
4	pymovements/pymovements A python package for processing eye movement data	76	Verified	134	Python
5	chapel-lang/chapel a Productive Parallel Programming Language	76	Verified	1,981	Chapel
6	dealii/dealii The development repository for the deal.II finite element library	76	Verified	1,649	C++
7	InsightSoftwareConsortium/ITK Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven,...	76	Verified	1,584	C++
8	scipy/scipy SciPy library main repository	76	Verified	14,590	Python
9	opendatacube/datacube-core Open Data Cube analyses continental scale Earth Observation data through time	76	Verified	571	Python
10	trilinos/Trilinos Primary repository for the Trilinos Project	76	Verified	1,374	C++
11	BOINC/boinc Open-source software for volunteer computing and grid computing.	76	Verified	2,373	PHP
12	spack/spack A flexible package manager that supports multiple versions, configurations,...	76	Verified	4,992	Python
13	OpenChemistry/avogadrolibs Avogadro libraries provide 3D rendering, visualization, analysis and data...	76	Verified	614	C++
14	mfem/mfem Lightweight, general, scalable C++ library for finite element methods	74	Verified	2,143	C++
15	opensim-org/opensim-core SimTK OpenSim C++ libraries and command-line applications, and Java/Python wrapping.	74	Verified	1,013	C++
16	visit-dav/visit VisIt - Visualization and Data Analysis for Mesh-based Scientific Data	74	Verified	513	C
17	optiland/optiland Comprehensive optical design, optimization, and analysis in Python,...	74	Verified	634	Python
18	regionmask/regionmask create masks of geospatial regions for arbitrary grids	73	Verified	259	Python
19	llnl/sundials Official development repository for SUNDIALS - a SUite of Nonlinear and...	71	Verified	644	C
20	adtzlr/felupe finite element analysis for continuum mechanics of solid bodies	70	Verified	171	Python
21	goplus/xgo XGo is a programming language that reads like plain English. But it's also...	69	Established	9,415	Go
22	shadow/shadow Shadow is a discrete-event network simulator that directly executes real...	69	Established	1,685	Rust
23	K-Dense-AI/scientific-agent-skills A set of ready to use Agent Skills for research, science, engineering,...	69	Established	18,028	Python
24	biotite-dev/biotite A comprehensive library for computational molecular biology	68	Established	937	Python
25	simpeg/simpeg Simulation and Parameter Estimation in Geophysics - A python package for...	67	Established	630	Python
26	usnistgov/fipy FiPy is a Finite Volume PDE solver written in Python	67	Established	608	Python
27	andykee/lentil Heart-healthy physical optics	65	Established	19	Python
28	openhpc/ohpc OpenHPC Integration, Packaging, and Test Repo	64	Established	977	C
29	geoschem/geos-chem GEOS-Chem "Science Codebase" repository. Contains GEOS-Chem science...	64	Established	227	Fortran
30	inducer/pyopencl OpenCL integration for Python, plus shiny features	64	Established	1,132	Python
31	scikit-bio/scikit-bio scikit-bio: a community-driven Python library for bioinformatics, providing...	64	Established	1,188	Python
32	espressomd/espresso The ESPResSo package	64	Established	266	C++
33	MFlowCode/MFC Exascale multiphase flow solver — 2025 Gordon Bell Prize Finalist \| 200T...	64	Established	352	Fortran
34	gem/oq-engine OpenQuake Engine: a software for Seismic Hazard and Risk Analysis	64	Established	430	Python
35	mumax/3 GPU-accelerated micromagnetic simulator	64	Established	491	Go
36	spack/spack-packages Spack's community package recipes	64	Established	125	Python
37	yt-project/yt Main yt repository	64	Established	546	Python
38	meteoinfo/MeteoInfo MeteoInfo: GIS, scientific computation and visualization environment.	63	Established	362	Java
39	inducer/meshpy 2D/3D simplicial mesh generator interface for Python (Triangle, TetGen, gmsh)	63	Established	577	C++
40	ucscGenomeBrowser/kent UCSC Genome Browser source. "beta" is released version / "master" is testing.	63	Established	261	C
41	betterscientificsoftware/bssw.io Better Scientific Software Homepage	63	Established	146	Python
42	pacs-course/pacs-examples The examples for the course on advanced programming for scientific computing...	62	Established	52	Shell
43	Alpine-DAV/ascent A flyweight in situ visualization and analysis runtime for multi-physics HPC...	62	Established	240	C++
44	gnudatalanguage/gdl GDL - GNU Data Language	62	Established	306	C++
45	SCIInstitute/SCIRun SCIRun is a Problem Solving Environment, for modeling, simulation and...	62	Established	137	C++
46	JuDFTteam/best-of-atomistic-machine-learning 🏆 A ranked list of awesome atomistic machine learning projects ⚛️🧬💎.	62	Established	638	—
47	feelpp/feelpp :gem: Feel++: Finite Element Embedded Language and Library in C++	62	Established	327	C++
48	llnl/SAMRAI Structured Adaptive Mesh Refinement Application Infrastructure - a scalable...	62	Established	242	C++
49	openmole/openmole Workflow engine for exploration of simulation models using high throughput computing	61	Established	152	Scala
50	pism/pism Parallel Ice Sheet Model (PISM)	61	Established	119	C++
51	mccode-dev/McCode The home of the McStas (neutrons) and McXtrace (x-rays) Monte-Carlo...	60	Established	90	Fortran
52	molmod/stacie Stable AutoCorrelation Integral Estimator	60	Established	17	Python
53	PDLPorters/pdl Scientific computing with Perl	60	Established	102	Perl
54	gonum/gonum Gonum is a set of numeric libraries for the Go programming language. It...	60	Established	8,345	Go
55	glotzerlab/freud Powerful, efficient particle trajectory analysis in scientific Python.	59	Established	319	C++
56	amberbiology/scribl Semantic Capture of Relationships In Biological Literature (scribl)	58	Established	5	Python
57	deepcharles/ruptures ruptures: change point detection in Python	58	Established	2,016	Python
58	gdtk-uq/gdtk The Gas Dynamics Toolkit (GDTk) is a set of software tools for simulating...	58	Established	105	D
59	martinjrobins/diffsol ODE solver library in Rust	58	Established	108	Rust
60	vlang/vsl V library to develop Artificial Intelligence and High-Performance Scientific...	57	Established	393	V
61	SciCompMod/memilio Modular spatio-temporal models for epidemic and pandemic simulations	57	Established	67	C++
62	nelson-lang/nelson The Nelson Programming Language	57	Established	123	C++
63	scientific-python/scientific-python.org Source for the Scientific Python Project homepage.	57	Established	40	HTML
64	gjbex/Scientific-C-plus-plus Repository for participants of the "Scientific C++" training	56	Established	46	C++
65	goplus/ixgo The Go/XGo Interpreter	55	Established	139	Go
66	wwang721/pyafv 🧬 Python code that implements the active finite Voronoi (AFV) model.	54	Established	21	Python
67	InSARdev/core Interferometric Synthetic Aperture Radar (InSAR) processing ecosystem for Python	54	Established	46	Python
68	sun-data/named-arrays Python library that implements named tensors with Astropy Quantity support.	53	Established	5	Python
69	ISSMteam/PINNICLE A general PINN framework for solving ice sheet modeling	53	Established	34	Python
70	OstapHEP/ostap User friendly and more intuitive interface to ROOT and PyROOT	53	Established	18	C
71	DataLab-Platform/DataLab Open-source Platform for Scientific and Technical Data Processing and Visualization	53	Established	88	Python
72	tsotchke/eshkol High-Performance LISP-like language for Scientific Computing and AI written in C++	53	Established	99	C++
73	abougouffa/minemacs MinEmacs: an Emacs configuration framework for daily use	53	Established	199	Emacs Lisp
74	mia-jinns/jinns Physics Informed Neural Networks (PINNs) + SPINNs + HyperPINNs + Adaptative...	53	Established	46	Jupyter Notebook
75	earth-system-radiation/pyRTE-RRTMGP Python interface to the RTE+RRTMGP Fortran software package	52	Established	16	Python
76	sinanislekdemir/payton Payton! Kickstart any 3D OpenGL + GTK Ideas in a few seconds!	52	Established	53	Python
77	sjdv1982/seamless Wrap Python functions and shell commands as content-addressed...	51	Established	20	Shell
78	cpmech/russell Rust Scientific Libary. ODE and DAE (Runge-Kutta) solvers. Special functions...	51	Established	181	Rust
79	Autostronomy/AstroPhot A fast, flexible, full featured, and differentiable astronomical image 2D...	50	Established	102	Python
80	sarisabban/Pose A bare metal Python library for building and manipulating protein molecular...	50	Established	19	Python
81	PyAutoLabs/PyAutoArray Array and grid manipulation for the PyAuto ecosystem	50	Established	10	Python
82	haddocking/haddock-restraints Generate restraints to be used in HADDOCK	50	Established	6	Rust
83	RESTGroup/rstsr An n-dimensional rust tensor library	50	Established	54	Rust
84	pathsim/pathview A Python first graphical user interface for PathSim.	49	Emerging	68	TypeScript
85	NathalyDM/nath.biohack A community-focused repository dedicated to fostering learning and...	49	Emerging	55	Jupyter Notebook
86	inducer/numerics-notes Slides/notes and Jupyter notebook demos for an introductory course of...	48	Emerging	62	Jupyter Notebook
87	chaobrain/pinnx Physics-Informed Neural Networks for Scientific Machine Learning in JAX	48	Emerging	8	Python
88	c-hydro/hmc-dev Hydrological Model Continuum (HMC) – Open-source distributed hydrological...	47	Emerging	4	Fortran
89	alconley/spectrix Interactive 1D/2D histogram fitter and data visualization tool for nuclear...	47	Emerging	10	Rust
90	runmat-org/runmat Open-source runtime for math. Write MATLAB syntax, run on CPU + GPU...	47	Emerging	203	Rust
91	dadesso17/RJ-PINNs RJ-PINNs, introduced by Dadoyi Dadesso, is a novel framework that...	45	Emerging	5	Python
92	equipez/setup_mex This package provides scripts that attempt to facilitate setting up the MATLAB MEX.	45	Emerging	4	MATLAB
93	ntumitolab/mmsb-bebi-5009 Mathematical Modeling for Systems Biology	45	Emerging	5	Julia
94	stdlib-js/www-status Uptime and status monitor for the stdlib website.	45	Emerging	5	Markdown
95	scigolib/hdf5 Modern Pure Go implementation of the HDF5 file format	45	Emerging	26	Go
96	pasteurlabs/tesseract-core Universal, autodiff-native software components for Simulation Intelligence. 📦	45	Emerging	97	Python
97	smec-ethz/bamboost A Python library built for data-management using the HDF5 file format.	44	Emerging	6	Python
98	gauravfs-14/awesome-pinns A carefully curated collection of high-quality libraries, projects,...	44	Emerging	90	JavaScript
99	JaneliaSciComp/hortacloud HortaCloud - 3D annotation platform for large microscopy data	41	Emerging	10	JavaScript
100	Dicklesworthstone/franken_numpy Memory-safe clean-room Rust reimplementation of NumPy with strict/hardened...	40	Emerging	4	Python
101	Axect/magi-researchers Three AI models, one synthesis — Claude, Gemini & Codex cross-verify each...	40	Emerging	12	Python
102	Dicklesworthstone/frankenscipy Clean-room Rust reimplementation of SciPy with Condition-Aware Solver...	40	Emerging	4	Rust
103	dollspace-gay/ferray A NumPy-equivalent scientific computing library for Rust. Correctly-rounded...	39	Emerging	14	Rust
104	not-that-guy-again/bioAF A self-hosted platform for orchestrating bioinformatics pipelines, managing...	39	Emerging	3	Python
105	rizukirr/numc A fast, lightweight NumPy-like N-dimensional tensor library in C, built for...	37	Emerging	7	C
106	JuliaGeometry/MeshIntegrals.jl Numerical integration over Meshes.jl geometry domains	36	Emerging	30	Julia
107	GSEA-MSigDB/GSEA.jl Julia implementation of the next generation GSEA 🏔️	36	Emerging	36	Julia
108	climet-eu/lab Online Laboratory for Climate Science and Meteorology	34	Emerging	9	Python
109	bloody2634/claud-skills 🚀 Build and utilize production-ready Claude Code agents and skills for...	33	Emerging	4	Python
110	MundyRepo/MuNDy Runtime-extensible multibody dynamics on N-GPUs.	33	Emerging	5	C++
111	docxology/MetaInformAnt Integration for Ants and Beyond	33	Emerging	5	Python
112	Geoenergia-Lab/cudaLBM A high-performance computing project that implements the moment...	33	Emerging	5	Cuda
113	Siderust/qtty A lightweight, standalone Rust crate that powers Siderust's dimensional...	33	Emerging	4	Rust
114	scigolib/matlab Pure Go library for reading and writing MATLAB .mat files (v5-v7.3+). No...	33	Emerging	10	Go
115	bbeckley-hub/EcoliTyper EcoliTyper: A species-optimized computational pipeline for comprehensive...	33	Emerging	12	Python
116	ma-compbio-lab/SkillFoundry A framework for discovering, compiling, and validating reusable skills for...	33	Emerging	16	HTML
117	gift-framework/GIFT Geometric Information Field Theory. 33 SM predictions from pure topology....	31	Emerging	3	TeX
118	Krasnovvvvv/numerical-methods-in-physics High-performance, educational C++ project with modular and extensible...	31	Emerging	4	C++
119	openwave-labs/openwave OpenWave is an open-source subatomic wave simulator for exploring...	31	Emerging	3	Python
120	NachoPeinador/PIA-KRASv2-Nb Official repository for the OUP published paper: "Computational Design of a...	31	Emerging	4	Jupyter Notebook
121	Zhi-Chao-PAN/safety-critical-battery-prognostics A reproducible battery prognostics repository with a three-layer physics...	27	Experimental	3	Python
122	pablo-reyes8/alphafold2-from-scratch A from-scratch AlphaFold2 in PyTorch designed to make one of the most...	26	Experimental	7	Python
123	grantdh/apple-bottom BLASphemy: Metal-native linear algebra for Apple Silicon...because cuBLAS...	25	Experimental	3	C