Augmented-Nature/PDB-MCP-Server

A Model Context Protocol (MCP) server that provides access to the Protein Data Bank (PDB) - the worldwide repository of information about the 3D structures of proteins, nucleic acids, and complex assemblies.

38
/ 100
Emerging

Exposes PDB search, structure retrieval, and quality validation through five core tools and URI-based resources, enabling direct access to multiple coordinate formats (PDB, mmCIF, mmTF, XML) and validation metrics like resolution, R-factors, and clash scores. Integrates with RCSB PDB's REST, Search, and File Download APIs via stdio transport for seamless integration with Claude Desktop and complementary servers like UniProt and AlphaFold MCP. Implements comprehensive error handling for API rate limiting, invalid identifiers, and network failures.

No Package No Dependents
Maintenance 6 / 25
Adoption 6 / 25
Maturity 9 / 25
Community 17 / 25

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Stars

21

Forks

8

Language

JavaScript

License

Last pushed

Dec 21, 2025

Commits (30d)

0

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