effieklimi/ensembl-mcp-server
A full-featured Model Context Protocol (MCP) server that exposes Ensembl’s REST API. Built using the TypeScript MCP SDK
Abstracts 10 functional tools spanning gene lookup, sequence retrieval, variant annotation, comparative genomics, and regulatory features—enabling AI assistants to query nearly the entire Ensembl REST API without managing individual endpoints. Implements built-in rate limiting and uses stdio transport for seamless integration with Claude Desktop and other MCP-compatible clients. Task-oriented grouping (by biological workflow rather than REST paths) allows LLMs to discover relevant genomic operations intuitively.
Stars
6
Forks
6
Language
TypeScript
License
MIT
Category
Last pushed
Feb 11, 2026
Commits (30d)
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