baksho/AMRxformer

Predict antomicrobial resistance (AMR) for a pathogen (Staphylococcus aureus) against an antibiotic (Cefoxitin) using encoder-only transformer given the genomic sequence of one of its genes (gene pbp4) as input.

11
/ 100
Experimental

No commits in the last 6 months.

Stale 6m No Package No Dependents
Maintenance 2 / 25
Adoption 0 / 25
Maturity 9 / 25
Community 0 / 25

How are scores calculated?

Stars

—

Forks

—

Language

Jupyter Notebook

License

MIT

Category

protein-transformers-ml

Last pushed

Jul 20, 2025

Commits (30d)

0

GitHub
Protein Transformers ML · 36 models

Get this data via API

curl "https://pt-edge.onrender.com/api/v1/quality/transformers/baksho/AMRxformer"

Open to everyone — 100 requests/day, no key needed. Get a free key for 1,000/day.

Higher-rated alternatives

lucidrains/alphagenome

Implementation of AlphaGenome, Deepmind's updated genomic attention model

55

BiomedSciAI/biomed-multi-omic

Build foundation model for RNA or DNA data

55

BioinfoMachineLearning/DeepInteract

A geometric deep learning framework (Geometric Transformers) for predicting protein interface...

53

Gleghorn-Lab/Protify

Low code molecular property prediction

43

Bindwell/PLAPT

Codebase and CLI for PLAPT: A state-of-the-art protein-ligand binding affinity model for drug discovery

40

Explore Transformer Models

All categories Trending Transformer directory Insights