dputhier/pygtftk
A python package and a set of shell commands to handle GTF files
Provides specialized genomic analysis through C/Cython-optimized core functions and Unix-style composable commands for filtering, converting, and querying GTF annotations. Includes OLOGRAM, a Monte Carlo tool for computing statistically significant overlaps between user-supplied BED regions and genomic features (exons, promoters, custom annotations), with support for n-wise combination enrichment analysis. Extensible via plugin architecture and integrates with bedtools and standard bioinformatics workflows.
Available on PyPI.
Stars
51
Forks
6
Language
Python
License
GPL-3.0
Category
Last pushed
Jan 20, 2026
Monthly downloads
321
Commits (30d)
0
Dependencies
25
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